Biomedical Physics · Cardiac Modeling

Suran
Galappaththige

Research Fellow at University of Exeter, Exeter, UK. Working on mathematical modeling and simulation of cardiac electrical activity — bridging physics, biology, and computation to advance regulatory science.

Education

2017
Ph.D. Biomedical Sciences: Medical Physics
Department of Physics, Oakland University, Michigan, USA
Dissertation: Modeling Unipolar and Bipolar Stimulation of Cardiac Tissue
Advisor: Prof. Bradley J. Roth
2010
M.Sc. Physics of Materials
Postgraduate Institute of Science, University of Peradeniya, Sri Lanka
Thesis: Application of Dynamic Light Scattering to Probe Molecular Dynamics in Polymer Gels
Advisor: Prof. Piyasiri Ekanayake
2001
B.Sc. (Hons) Physics, Applied Mathematics & Pure Mathematics
University of Colombo, Sri Lanka

Publications

Journal Articles
Data-Driven Uncertainty Quantification for Cardiac Electrophysiological Models: Impact of Physiological Variability on Action Potential and Spiral Wave Dynamics
Pathmanathan, P., Galappaththige, S. K., Cordeiro, J. M., Kaboudian, A., Fenton, F. H., Gray, R. A.
Frontiers in Physiology, 2020
Effect of heart structure on ventricular fibrillation in the rabbit: A simulation study
Galappaththige, S. K., Pathmanathan, P., Bishop, M., Gray, R.
Frontiers in Physiology, 2019
Modeling bipolar stimulation of cardiac tissue
Galappaththige, S. K., Gray, R. A., Roth, B. J.
Chaos: An Interdisciplinary Journal of Nonlinear Science, 2017
Cardiac strength-interval curves calculated using the bidomain model with a parsimonious ionic current
Galappaththige, S. K., Gray, R. A., Roth, B. J.
PloS One, 2017
Electrical Pacing of Cardiac Tissue Including Potassium Inward Rectification
Galappaththige, S. K., Roth, B. J.
PloS One, 2015
Conference Publications
Acute Effects of Nonexcitatory Electrical Stimulation During Systole in Human-induced Pluripotent Stem Cell Derived Cardiomyocytes
Feaster, T.K., Casciola, M., Galappaththige, S., Gray, R.A. and Blinova, K.
American Heart Association — Basic Cardiovascular Sciences Scientific Sessions, Chicago, USA. July 2020
Impact of Parameter Uncertainty on Cardiac Electrophysiological Model Predictions
Pathmanathan, P., Galappaththige, S., Cordeiro, J., Kaboudian, A., Fenton, F. and Gray R.A.
Verification & Validation Symposium, ASME. May 2020 (virtual)
Poster Presentations & Talks
Cardiac Modeling and Simulation
Galappaththige, S.
Division of Biomedical Physics, FDA, Silver Spring, Maryland — Research Talk. October 2019
Strength–Interval Curves using a Minimal Ionic Model and the Bidomain Model
Galappaththige, S. and Roth, B. J.
Biology and Medicine through Mathematics Conference, Virginia Commonwealth University, May 2016 (poster)
Electrical pacing of cardiac tissue including potassium inward rectification
Galappaththige, S. and Roth, B. J.
Sigma XI Research Festival, Oakland University, March 2015 (poster)

Research Projects

Evaluation of Methods for Patient-Specific Modeling and In Silico Clinical Trials for Cardiovascular Applications
Suran Galappaththige, Pras Pathmanathan, Richard Gray
PI: Dr. Pras Pathmanathan

A patient-specific model (PSM) is a computational model personalized to represent a particular patient. In silico clinical trials (ISCTs) use virtual patient cohorts to assess medical device performance. This project evaluates current PSM and ISCT methods for cardiovascular regulatory applications, with potential to reduce the size of real clinical trials.

Patient-specific modeling figure
Development of a Whole Heart Model for Regulatory Assessment of Novel Electrical Mapping Technology
Suran Galappaththige, Pras Pathmanathan, Richard Gray
PI: Dr. Richard Gray

Using 3D atria and bi-ventricular mesh models with CHASTE cardiac solver (finite element analysis) to simulate electrical wave propagation throughout the full heart. The goal is a computational model with known arrhythmia mechanisms to rigorously evaluate diagnostic device accuracy.

Whole heart simulation snapshots
Impact of Parameter Uncertainty on Cardiac Electrophysiological Model Predictions
Pras Pathmanathan, Suran Galappaththige, J. Cordeiro, A. Kaboudian, F. Fenton, Richard Gray
PI: Dr. Pras Pathmanathan

Cardiac EP models are increasingly used in clinical and regulatory contexts. This project assesses uncertainty in model predictions to ensure the reliability of clinical decisions. Contribution includes running simulations and analyzing outputs for parameter estimation.

Action potential variability across ionic currents
Acute Effects of Nonexcitatory Electrical Stimulation in Human-Induced Pluripotent Stem Cell-Derived Cardiomyocytes
T.K. Feaster, M. Casciola, Suran Galappaththige, Richard Gray, Ksenia Blinova
PI: Dr. Ksenia Blinova

Cardiac contractility modulation (CCM) delivers nonexcitatory electrical stimulations during the cardiac absolute refractory period. Contribution: developing automated image analysis code to measure cardiomyocyte contractility from large image datasets.

Cardiomyocyte contraction analysis pipeline
Mathematical Modeling and Computer Simulation of Electrical Stimulation of Cardiac Tissue
Suran Galappaththige, B.J. Roth
PI: Prof. Bradley J. Roth

Cardiac tissue modeled as a 2D bidomain with coupled PDEs describing extracellular and intracellular electrical properties. Active properties described by ion currents, solved numerically using Fortran to study tissue behavior under stimulation.

Strength-interval curves and anode break excitation
Multidisciplinary Microscopic Imaging Approach to Study Different Aspects of Cartilage Degradation
Suran Galappaththige, Yang Xia
PI: Prof. Yang Xia

Examined the degradation of articular cartilage using micro-MRI: setting up experiments, acquiring and analyzing images, and analyzing T1, T2 and T1ρ relaxation times in different zones of the cartilage.

T2 and T1rho profiles across cartilage depth
Application of Dynamic Light Scattering to Probe Molecular Dynamics in Polymer Gels
Suran Galappaththige, Piyasiri Ekanayake
PI: Prof. Piyasiri Ekanayake

The physical properties of a polymer gel — its elasticity, permeability, dangling ends, and the diffusion of connected strands and foreign particles — produce density fluctuations measurable by Dynamic Light Scattering (DLS), a noninvasive technique for resolving the gel's different relaxation modes.

Static light scattering set-up

Skills

My research is interdisciplinary, sitting at the intersection of Mathematics, Physics, Biology, and Computer Science. I have extensive experience in mathematical and computational modeling of biological systems, particularly cardiac electrophysiology, acquired over years of graduate research and postdoctoral work.

∂Numerical Methods

Finite difference methods for 2D cardiac tissue; finite element analysis (FEA) for 3D whole-heart models using CHASTE parallel solver (C++) and OpenCARP cardiac solver.

⌨Programming

Fortran C++ Python MATLAB Bash

⊞Scientific Computing

Scipy Numpy CHASTE Parallel Python

◎Image Analysis

Digital image analysis using Python and Parallel Python; micro-MRI T1, T2, T1ρ relaxation analysis in cartilage.

⚙Tools & Systems

Git LaTeX Meshtool Meshlab GIMP Inkscape Ubuntu

🎓Certification

Introduction to Data Science in Python
View Certificate ↗

Coursework

PhD

Radiation Biophysics · Modeling Complex Systems · Bioelectric Phenomena · Nuclear Magnetic Resonance · Medical Physics · Theoretical Physics · Quantum Physics · Design & Analysis of Algorithms · Ethics and Practices of Science

MSc

Mathematical & Computational Methods · Electron Theory of Solids · Semiconductors · Ceramic Materials · Polymers · Material Characterization · Nuclear Materials

BSc

General & Modern Physics · AC Theory · Waves and Vibrations · Thermal Physics · Differential Equations · Numerical Methods · Mathematical Modeling in Economics · Regression & Time Series · Environmental & Health Physics · Applied Nuclear Science · Introduction to Nuclear Physics

Teaching

There is nothing more exciting to a teacher than the moment a student shows signs of joy in understanding. My teaching career spans nearly a decade before doctoral studies — from secondary schools in Sri Lanka, Oman, and the Maldives, to university laboratories and lecture halls in the USA. I love teaching, and my passion for science and for sharing knowledge drives that love every day.

Secondary Level
  • Physics & Mathematics Teacher
    Wycherley International School, Colombo, Sri Lanka
  • Physics & Mathematics Teacher
    Sri Lankan International School, Muscat, Oman
  • Physics & Mathematics Teacher
    Jalaluddin School, Ministry of Education, Republic of Maldives
Post-Secondary & Undergraduate
  • Physics Teaching Assistant
    Oakland University, Michigan, USA
  • Physics Lecturer
    Oakland University, Michigan, USA
  • Physics Lecturer
    American National College, Colombo, Sri Lanka
  • Temporary Demonstrator
    University of Colombo, Sri Lanka
  • Faculty Member, Mathematics & CS
    Informatics PLC, Colombo, Sri Lanka